flory
‘flory’ Python package
Examples
Theory
Symbols and Conventions
API reference
Implementation details
flory
Index
Index
Symbols
|
_
|
A
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
V
Symbols
**kwargs (flory.shortcut.find_coexisting_phases parameter)
,
[1]
_
_compiled_impl() (CanonicalEnsemble method)
(ConstraintBase method)
(EnsembleBase method)
(EntropyBase method)
(FloryHugginsInteraction method)
(GrandCanonicalEnsemble method)
(IdealGasEntropy method)
(InteractionBase method)
(LinearGlobalConstraint method)
(LinearLocalConstraint method)
(NoConstraint method)
_energy_impl() (EntropyBase method)
(FloryHuggins method)
(FloryHugginsInteraction method)
(FreeEnergyBase method)
(IdealGasEntropy method)
(InteractionBase method)
_hessian_impl() (EntropyBase method)
(FloryHuggins method)
(FloryHugginsInteraction method)
(FreeEnergyBase method)
(IdealGasEntropy method)
(InteractionBase method)
_jacobian_impl() (EntropyBase method)
(FloryHuggins method)
(FloryHugginsInteraction method)
(FreeEnergyBase method)
(IdealGasEntropy method)
(InteractionBase method)
A
acceptance_Js (flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
acceptance_omega (flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
acceptance_ratio (flory.constraint.linear_global.LinearGlobalConstraintCompiled parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraintCompiled parameter)
,
[1]
additional_chis_shift (flory.interaction.flory_huggins.FloryHugginsInteraction._compiled_impl parameter)
,
[1]
axis (flory.free_energy.base.FreeEnergyBase.check_volume_fractions parameter)
,
[1]
,
[2]
(flory.free_energy.flory_huggins.FloryHuggins.check_volume_fractions parameter)
C
CanonicalEnsemble (class in flory.ensemble.canonical)
CanonicalEnsembleCompiled (class in flory.ensemble.canonical)
check_field() (CoexistingPhasesFinder method)
check_instance() (CoexistingPhasesFinder method)
check_volume_fractions() (FloryHuggins method)
(FreeEnergyBase method)
chemical_potentials() (FloryHuggins method)
(FreeEnergyBase method)
chi (flory.interaction.flory_huggins.FloryHugginsInteraction.from_uniform parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction.set_uniform_chis parameter)
,
[1]
chi_mean (flory.interaction.flory_huggins.FloryHugginsInteraction.from_random_normal parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction.set_random_chis parameter)
,
[1]
chi_std (flory.interaction.flory_huggins.FloryHugginsInteraction.from_random_normal parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction.set_random_chis parameter)
,
[1]
chis (flory.free_energy.flory_huggins.FloryHuggins parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteractionCompiled parameter)
,
[1]
(flory.shortcut.find_coexisting_phases parameter)
,
[1]
(FloryHuggins property)
(FloryHugginsInteraction property)
chis_shift (flory.interaction.flory_huggins.FloryHugginsInteractionCompiled parameter)
,
[1]
CoexistingPhasesFinder (class in flory.mcmp.finder)
comp_to_feat() (EntropyBaseCompiled method)
(IdealGasEntropyCompiled method)
compiled() (CanonicalEnsemble method)
(ConstraintBase method)
(EnsembleBase method)
(EntropyBase method)
(FloryHugginsInteraction method)
(GrandCanonicalEnsemble method)
(IdealGasEntropy method)
(InteractionBase method)
(LinearGlobalConstraint method)
(LinearLocalConstraint method)
(NoConstraint method)
compiled_instance (flory.mcmp.finder.CoexistingPhasesFinder.check_instance parameter)
,
[1]
ComponentNumberError
conserved (flory.free_energy.base.FreeEnergyBase.is_stable parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.num_unstable_modes parameter)
,
[1]
,
[2]
(flory.free_energy.flory_huggins.FloryHuggins.is_stable parameter)
(flory.free_energy.flory_huggins.FloryHuggins.num_unstable_modes parameter)
constraint_acceptance_ratio (flory.constraint.linear_global.LinearGlobalConstraint._compiled_impl parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraint._compiled_impl parameter)
,
[1]
constraint_elasticity (flory.constraint.linear_global.LinearGlobalConstraint._compiled_impl parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraint._compiled_impl parameter)
,
[1]
ConstraintBase (class in flory.constraint.base)
ConstraintBaseCompiled (class in flory.constraint.base)
constraints (flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.set_constraints parameter)
,
[1]
convergence_criterion (flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
count_valid_compartments() (in module flory.mcmp._finder_impl)
Cs (flory.constraint.linear_global.LinearGlobalConstraint parameter)
,
[1]
(flory.constraint.linear_global.LinearGlobalConstraintCompiled parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraint parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraintCompiled parameter)
,
[1]
(LinearGlobalConstraint property)
(LinearLocalConstraint property)
D
diagnostics (CoexistingPhasesFinder property)
dist (flory.common.phases.Phases.get_clusters parameter)
,
[1]
E
elasticity (flory.constraint.linear_global.LinearGlobalConstraintCompiled parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraintCompiled parameter)
,
[1]
ensemble (flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.set_ensemble parameter)
,
[1]
EnsembleBase (class in flory.ensemble.base)
EnsembleBaseCompiled (class in flory.ensemble.base)
entropy (flory.free_energy.base.FreeEnergyBase parameter)
,
[1]
(flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.set_entropy parameter)
,
[1]
entropy_compiled() (FloryHuggins method)
(FreeEnergyBase method)
EntropyBase (class in flory.entropy.base)
EntropyBaseCompiled (class in flory.entropy.base)
evolve() (ConstraintBaseCompiled method)
(LinearGlobalConstraintCompiled method)
(LinearLocalConstraintCompiled method)
(NoConstraintCompiled method)
exchange_chemical_potentials() (FloryHuggins method)
(FreeEnergyBase method)
F
FeatureNumberError
field (flory.mcmp.finder.CoexistingPhasesFinder.check_field parameter)
,
[1]
filter_kwargs() (in module flory.common.utilities)
find_coexisting_phases() (in module flory.shortcut)
flory
module
flory.common
module
flory.common.exceptions
module
flory.common.phases
module
flory.common.utilities
module
flory.constraint
module
flory.constraint.base
module
flory.constraint.linear_global
module
flory.constraint.linear_local
module
flory.constraint.no
module
flory.ensemble
module
flory.ensemble.base
module
flory.ensemble.canonical
module
flory.ensemble.grandcanonical
module
flory.entropy
module
flory.entropy.base
module
flory.entropy.ideal_gas
module
flory.free_energy
module
flory.free_energy.base
module
flory.free_energy.flory_huggins
module
flory.interaction
module
flory.interaction.base
module
flory.interaction.flory_huggins
module
flory.mcmp
module
flory.mcmp._finder_impl
module
flory.mcmp.finder
module
flory.shortcut
module
FloryHuggins (class in flory.free_energy.flory_huggins)
FloryHugginsInteraction (class in flory.interaction.flory_huggins)
FloryHugginsInteractionCompiled (class in flory.interaction.flory_huggins)
fractions (flory.common.phases.Phases parameter)
,
[1]
free_energy_density() (FloryHuggins method)
(FreeEnergyBase method)
FreeEnergyBase (class in flory.free_energy.base)
from_chemical_potential() (GrandCanonicalEnsemble class method)
from_random_normal() (FloryHuggins class method)
(FloryHugginsInteraction class method)
from_uniform() (FloryHuggins class method)
(FloryHugginsInteraction class method)
func (flory.common.utilities.filter_kwargs parameter)
,
[1]
G
get_clusters() (Phases method)
GrandCanonicalEnsemble (class in flory.ensemble.grandcanonical)
GrandCanonicalEnsembleCompiled (class in flory.ensemble.grandcanonical)
H
hessian() (FloryHuggins method)
(FreeEnergyBase method)
I
IdealGasEntropy (class in flory.entropy.ideal_gas)
IdealGasEntropyCompiled (class in flory.entropy.ideal_gas)
if_reset_revive (flory.mcmp.finder.CoexistingPhasesFinder.set_constraints parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.set_ensemble parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.set_entropy parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.set_interaction parameter)
,
[1]
incomp_coef() (FloryHugginsInteractionCompiled method)
(InteractionBaseCompiled method)
independent_entries (FloryHugginsInteraction property)
index (flory.free_energy.base.FreeEnergyBase.exchange_chemical_potentials parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.hessian parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.jacobian parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.pressure parameter)
,
[1]
,
[2]
(flory.free_energy.flory_huggins.FloryHuggins.exchange_chemical_potentials parameter)
(flory.free_energy.flory_huggins.FloryHuggins.hessian parameter)
(flory.free_energy.flory_huggins.FloryHuggins.jacobian parameter)
(flory.free_energy.flory_huggins.FloryHuggins.pressure parameter)
initialize() (ConstraintBaseCompiled method)
(LinearGlobalConstraintCompiled method)
(LinearLocalConstraintCompiled method)
(NoConstraintCompiled method)
interaction (flory.free_energy.base.FreeEnergyBase parameter)
,
[1]
(flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.set_interaction parameter)
,
[1]
interaction_compiled() (FloryHuggins method)
(FreeEnergyBase method)
InteractionBase (class in flory.interaction.base)
InteractionBaseCompiled (class in flory.interaction.base)
interval (flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.run parameter)
,
[1]
is_stable() (FloryHuggins method)
(FreeEnergyBase method)
J
jacobian() (FloryHuggins method)
(FreeEnergyBase method)
Js (flory.constraint.base.ConstraintBaseCompiled.prepare parameter)
,
[1]
,
[2]
,
[3]
,
[4]
(flory.constraint.linear_global.LinearGlobalConstraintCompiled.prepare parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraintCompiled.prepare parameter)
,
[1]
(flory.constraint.no.NoConstraintCompiled.prepare parameter)
,
[1]
(flory.entropy.base.EntropyBaseCompiled.partition parameter)
,
[1]
,
[2]
(flory.entropy.ideal_gas.IdealGasEntropyCompiled.partition parameter)
,
[1]
(flory.mcmp._finder_impl.count_valid_compartments parameter)
,
[1]
(flory.mcmp._finder_impl.make_valid_compartment_masks parameter)
,
[1]
(flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp._finder_impl.revive_compartments_by_copy parameter)
,
[1]
(flory.mcmp._finder_impl.revive_compartments_by_random parameter)
,
[1]
Js_step_upper_bound (flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
K
kill_threshold (flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
kwargs (flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.set_constraints parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.set_ensemble parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.set_entropy parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.set_interaction parameter)
,
[1]
kwargs_full (flory.common.utilities.filter_kwargs parameter)
,
[1]
(flory.constraint.base.ConstraintBase.compiled parameter)
,
[1]
,
[2]
,
[3]
,
[4]
(flory.constraint.linear_global.LinearGlobalConstraint.compiled parameter)
(flory.constraint.linear_local.LinearLocalConstraint.compiled parameter)
(flory.constraint.no.NoConstraint.compiled parameter)
(flory.ensemble.base.EnsembleBase.compiled parameter)
,
[1]
,
[2]
,
[3]
(flory.ensemble.canonical.CanonicalEnsemble.compiled parameter)
(flory.ensemble.grandcanonical.GrandCanonicalEnsemble.compiled parameter)
(flory.entropy.base.EntropyBase.compiled parameter)
,
[1]
,
[2]
(flory.entropy.ideal_gas.IdealGasEntropy.compiled parameter)
(flory.free_energy.base.FreeEnergyBase.entropy_compiled parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.interaction_compiled parameter)
,
[1]
,
[2]
(flory.free_energy.flory_huggins.FloryHuggins.entropy_compiled parameter)
(flory.free_energy.flory_huggins.FloryHuggins.interaction_compiled parameter)
(flory.interaction.base.InteractionBase.compiled parameter)
,
[1]
,
[2]
(flory.interaction.flory_huggins.FloryHugginsInteraction.compiled parameter)
kwargs_individual (flory.mcmp.finder.CoexistingPhasesFinder.set_constraints parameter)
,
[1]
L
LinearGlobalConstraint (class in flory.constraint.linear_global)
LinearGlobalConstraintCompiled (class in flory.constraint.linear_global)
LinearLocalConstraint (class in flory.constraint.linear_local)
LinearLocalConstraintCompiled (class in flory.constraint.linear_local)
M
make_valid_compartment_masks() (in module flory.mcmp._finder_impl)
masks (flory.constraint.base.ConstraintBaseCompiled.evolve parameter)
,
[1]
,
[2]
,
[3]
,
[4]
(flory.constraint.base.ConstraintBaseCompiled.prepare parameter)
,
[1]
,
[2]
,
[3]
,
[4]
(flory.constraint.linear_global.LinearGlobalConstraintCompiled.evolve parameter)
,
[1]
(flory.constraint.linear_global.LinearGlobalConstraintCompiled.prepare parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraintCompiled.evolve parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraintCompiled.prepare parameter)
,
[1]
(flory.constraint.no.NoConstraintCompiled.evolve parameter)
,
[1]
(flory.constraint.no.NoConstraintCompiled.prepare parameter)
,
[1]
(flory.ensemble.base.EnsembleBaseCompiled.normalize parameter)
,
[1]
,
[2]
,
[3]
(flory.ensemble.canonical.CanonicalEnsembleCompiled.normalize parameter)
,
[1]
(flory.ensemble.grandcanonical.GrandCanonicalEnsembleCompiled.normalize parameter)
,
[1]
max_revive_per_compartment (flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
max_steps (flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.run parameter)
,
[1]
mean_fractions (Phases property)
module
flory
flory.common
flory.common.exceptions
flory.common.phases
flory.common.utilities
flory.constraint
flory.constraint.base
flory.constraint.linear_global
flory.constraint.linear_local
flory.constraint.no
flory.ensemble
flory.ensemble.base
flory.ensemble.canonical
flory.ensemble.grandcanonical
flory.entropy
flory.entropy.base
flory.entropy.ideal_gas
flory.free_energy
flory.free_energy.base
flory.free_energy.flory_huggins
flory.interaction
flory.interaction.base
flory.interaction.flory_huggins
flory.mcmp
flory.mcmp._finder_impl
flory.mcmp.finder
flory.shortcut
multicomponent_self_consistent_metastep() (in module flory.mcmp._finder_impl)
mus (flory.ensemble.grandcanonical.GrandCanonicalEnsemble.from_chemical_potential parameter)
,
[1]
N
NoConstraint (class in flory.constraint.no)
NoConstraintCompiled (class in flory.constraint.no)
normalize() (CanonicalEnsembleCompiled method)
(EnsembleBaseCompiled method)
(GrandCanonicalEnsembleCompiled method)
num_comp (CanonicalEnsembleCompiled property)
(EnsembleBaseCompiled property)
(EntropyBaseCompiled property)
(flory.ensemble.base.EnsembleBase parameter)
,
[1]
(flory.ensemble.canonical.CanonicalEnsemble parameter)
,
[1]
(flory.ensemble.grandcanonical.GrandCanonicalEnsemble parameter)
,
[1]
(flory.ensemble.grandcanonical.GrandCanonicalEnsemble.from_chemical_potential parameter)
,
[1]
(flory.entropy.base.EntropyBase parameter)
,
[1]
(flory.entropy.ideal_gas.IdealGasEntropy parameter)
,
[1]
(flory.free_energy.flory_huggins.FloryHuggins parameter)
,
[1]
(flory.interaction.base.InteractionBase parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction.from_random_normal parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction.from_uniform parameter)
,
[1]
(flory.shortcut.find_coexisting_phases parameter)
,
[1]
(GrandCanonicalEnsembleCompiled property)
(IdealGasEntropyCompiled property)
num_components (Phases property)
num_feat (ConstraintBaseCompiled property)
(EntropyBaseCompiled property)
(flory.constraint.base.ConstraintBase parameter)
,
[1]
(flory.constraint.linear_global.LinearGlobalConstraint parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraint parameter)
,
[1]
(flory.constraint.no.NoConstraint parameter)
,
[1]
(flory.constraint.no.NoConstraintCompiled parameter)
,
[1]
(FloryHugginsInteractionCompiled property)
(IdealGasEntropyCompiled property)
(InteractionBaseCompiled property)
(LinearGlobalConstraintCompiled property)
(LinearLocalConstraintCompiled property)
(NoConstraintCompiled property)
num_part (flory.constraint.base.ConstraintBaseCompiled.initialize parameter)
,
[1]
,
[2]
,
[3]
,
[4]
(flory.constraint.linear_global.LinearGlobalConstraintCompiled.initialize parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraintCompiled.initialize parameter)
,
[1]
(flory.constraint.no.NoConstraintCompiled.initialize parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
num_phases (Phases property)
num_unstable_modes() (FloryHuggins method)
(FreeEnergyBase method)
O
omegas (CoexistingPhasesFinder property)
(flory.entropy.base.EntropyBaseCompiled.partition parameter)
,
[1]
,
[2]
(flory.entropy.ideal_gas.IdealGasEntropyCompiled.partition parameter)
,
[1]
(flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.reinitialize_from_omegas parameter)
,
[1]
P
partition() (EntropyBaseCompiled method)
(IdealGasEntropyCompiled method)
Phases (class in flory.common.phases)
phi_means (CanonicalEnsemble property)
(flory.ensemble.canonical.CanonicalEnsemble parameter)
,
[1]
(flory.ensemble.canonical.CanonicalEnsembleCompiled parameter)
,
[1]
(flory.shortcut.find_coexisting_phases parameter)
,
[1]
phis (flory.entropy.base.EntropyBase._energy_impl parameter)
,
[1]
,
[2]
(flory.entropy.base.EntropyBase._hessian_impl parameter)
,
[1]
,
[2]
(flory.entropy.base.EntropyBase._jacobian_impl parameter)
,
[1]
,
[2]
(flory.entropy.ideal_gas.IdealGasEntropy._energy_impl parameter)
,
[1]
(flory.entropy.ideal_gas.IdealGasEntropy._hessian_impl parameter)
,
[1]
(flory.entropy.ideal_gas.IdealGasEntropy._jacobian_impl parameter)
,
[1]
(flory.free_energy.base.FreeEnergyBase._energy_impl parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase._hessian_impl parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase._jacobian_impl parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.check_volume_fractions parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.chemical_potentials parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.exchange_chemical_potentials parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.free_energy_density parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.hessian parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.is_stable parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.jacobian parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.num_unstable_modes parameter)
,
[1]
,
[2]
(flory.free_energy.base.FreeEnergyBase.pressure parameter)
,
[1]
,
[2]
(flory.free_energy.flory_huggins.FloryHuggins._energy_impl parameter)
(flory.free_energy.flory_huggins.FloryHuggins._hessian_impl parameter)
(flory.free_energy.flory_huggins.FloryHuggins._jacobian_impl parameter)
(flory.free_energy.flory_huggins.FloryHuggins.check_volume_fractions parameter)
(flory.free_energy.flory_huggins.FloryHuggins.chemical_potentials parameter)
(flory.free_energy.flory_huggins.FloryHuggins.exchange_chemical_potentials parameter)
(flory.free_energy.flory_huggins.FloryHuggins.free_energy_density parameter)
(flory.free_energy.flory_huggins.FloryHuggins.hessian parameter)
(flory.free_energy.flory_huggins.FloryHuggins.is_stable parameter)
(flory.free_energy.flory_huggins.FloryHuggins.jacobian parameter)
(flory.free_energy.flory_huggins.FloryHuggins.num_unstable_modes parameter)
(flory.free_energy.flory_huggins.FloryHuggins.pressure parameter)
(flory.interaction.base.InteractionBase._energy_impl parameter)
,
[1]
,
[2]
(flory.interaction.base.InteractionBase._hessian_impl parameter)
,
[1]
,
[2]
(flory.interaction.base.InteractionBase._jacobian_impl parameter)
,
[1]
,
[2]
(flory.interaction.flory_huggins.FloryHugginsInteraction._energy_impl parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction._hessian_impl parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction._jacobian_impl parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.reinitialize_from_phis parameter)
,
[1]
phis_comp (flory.ensemble.base.EnsembleBaseCompiled.normalize parameter)
,
[1]
,
[2]
,
[3]
(flory.ensemble.canonical.CanonicalEnsembleCompiled.normalize parameter)
,
[1]
(flory.ensemble.grandcanonical.GrandCanonicalEnsembleCompiled.normalize parameter)
,
[1]
(flory.entropy.base.EntropyBaseCompiled.comp_to_feat parameter)
,
[1]
,
[2]
(flory.entropy.base.EntropyBaseCompiled.partition parameter)
,
[1]
,
[2]
(flory.entropy.ideal_gas.IdealGasEntropyCompiled.comp_to_feat parameter)
,
[1]
(flory.entropy.ideal_gas.IdealGasEntropyCompiled.partition parameter)
,
[1]
(flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
phis_feat (flory.constraint.base.ConstraintBaseCompiled.prepare parameter)
,
[1]
,
[2]
,
[3]
,
[4]
(flory.constraint.linear_global.LinearGlobalConstraintCompiled.prepare parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraintCompiled.prepare parameter)
,
[1]
(flory.constraint.no.NoConstraintCompiled.prepare parameter)
,
[1]
(flory.entropy.base.EntropyBaseCompiled.comp_to_feat parameter)
,
[1]
,
[2]
(flory.entropy.ideal_gas.IdealGasEntropyCompiled.comp_to_feat parameter)
,
[1]
(flory.interaction.base.InteractionBaseCompiled.incomp_coef parameter)
,
[1]
,
[2]
(flory.interaction.base.InteractionBaseCompiled.potential parameter)
,
[1]
,
[2]
(flory.interaction.base.InteractionBaseCompiled.volume_derivative parameter)
,
[1]
,
[2]
(flory.interaction.flory_huggins.FloryHugginsInteractionCompiled.incomp_coef parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteractionCompiled.potential parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteractionCompiled.volume_derivative parameter)
,
[1]
(flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
potential (ConstraintBaseCompiled property)
(flory.interaction.base.InteractionBaseCompiled.volume_derivative parameter)
,
[1]
,
[2]
(flory.interaction.flory_huggins.FloryHugginsInteractionCompiled.volume_derivative parameter)
,
[1]
(LinearGlobalConstraintCompiled property)
(LinearLocalConstraintCompiled property)
(NoConstraintCompiled property)
potential() (FloryHugginsInteractionCompiled method)
(InteractionBaseCompiled method)
prepare() (ConstraintBaseCompiled method)
(LinearGlobalConstraintCompiled method)
(LinearLocalConstraintCompiled method)
(NoConstraintCompiled method)
pressure() (FloryHuggins method)
(FreeEnergyBase method)
progress (flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.run parameter)
,
[1]
Q
Qs (flory.ensemble.base.EnsembleBaseCompiled.normalize parameter)
,
[1]
,
[2]
,
[3]
(flory.ensemble.canonical.CanonicalEnsembleCompiled.normalize parameter)
,
[1]
(flory.ensemble.grandcanonical.GrandCanonicalEnsembleCompiled.normalize parameter)
,
[1]
R
random_std (flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
reinitialize_constraint() (CoexistingPhasesFinder method)
reinitialize_from_omegas() (CoexistingPhasesFinder method)
reinitialize_from_phis() (CoexistingPhasesFinder method)
reinitialize_random() (CoexistingPhasesFinder method)
reset_revive() (CoexistingPhasesFinder method)
revive_compartments_by_copy() (in module flory.mcmp._finder_impl)
revive_compartments_by_random() (in module flory.mcmp._finder_impl)
revive_scaler (flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
revive_tries (flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
rng (flory.interaction.flory_huggins.FloryHugginsInteraction.from_random_normal parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction.set_random_chis parameter)
,
[1]
(flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
(flory.mcmp._finder_impl.revive_compartments_by_copy parameter)
,
[1]
(flory.mcmp._finder_impl.revive_compartments_by_random parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
run() (CoexistingPhasesFinder method)
S
scaled_activity (flory.ensemble.grandcanonical.GrandCanonicalEnsemble parameter)
,
[1]
(flory.ensemble.grandcanonical.GrandCanonicalEnsembleCompiled parameter)
,
[1]
(GrandCanonicalEnsemble property)
scaler (flory.mcmp._finder_impl.revive_compartments_by_random parameter)
,
[1]
set_constraints() (CoexistingPhasesFinder method)
set_ensemble() (CoexistingPhasesFinder method)
set_entropy() (CoexistingPhasesFinder method)
set_interaction() (CoexistingPhasesFinder method)
set_random_chis() (FloryHugginsInteraction method)
set_uniform_chis() (FloryHugginsInteraction method)
sizes (flory.ensemble.grandcanonical.GrandCanonicalEnsemble.from_chemical_potential parameter)
,
[1]
(flory.entropy.ideal_gas.IdealGasEntropy parameter)
,
[1]
(flory.entropy.ideal_gas.IdealGasEntropyCompiled parameter)
,
[1]
(flory.free_energy.flory_huggins.FloryHuggins parameter)
,
[1]
(flory.shortcut.find_coexisting_phases parameter)
,
[1]
(FloryHuggins property)
(IdealGasEntropy property)
sort() (Phases method)
step (flory.constraint.base.ConstraintBaseCompiled.evolve parameter)
,
[1]
,
[2]
,
[3]
,
[4]
(flory.constraint.linear_global.LinearGlobalConstraintCompiled.evolve parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraintCompiled.evolve parameter)
,
[1]
(flory.constraint.no.NoConstraintCompiled.evolve parameter)
,
[1]
steps_inner (flory.mcmp._finder_impl.multicomponent_self_consistent_metastep parameter)
,
[1]
T
targets (flory.mcmp._finder_impl.revive_compartments_by_copy parameter)
,
[1]
(flory.mcmp._finder_impl.revive_compartments_by_random parameter)
,
[1]
threshold (flory.mcmp._finder_impl.count_valid_compartments parameter)
,
[1]
(flory.mcmp._finder_impl.make_valid_compartment_masks parameter)
,
[1]
(flory.mcmp._finder_impl.revive_compartments_by_copy parameter)
,
[1]
(flory.mcmp._finder_impl.revive_compartments_by_random parameter)
,
[1]
tolerance (flory.mcmp.finder.CoexistingPhasesFinder parameter)
,
[1]
(flory.mcmp.finder.CoexistingPhasesFinder.run parameter)
,
[1]
Ts (flory.constraint.linear_global.LinearGlobalConstraint parameter)
,
[1]
(flory.constraint.linear_global.LinearGlobalConstraintCompiled parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraint parameter)
,
[1]
(flory.constraint.linear_local.LinearLocalConstraintCompiled parameter)
,
[1]
(LinearGlobalConstraint property)
(LinearLocalConstraint property)
V
vanishing_diagonal (flory.interaction.flory_huggins.FloryHugginsInteraction.from_random_normal parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction.from_uniform parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction.set_random_chis parameter)
,
[1]
(flory.interaction.flory_huggins.FloryHugginsInteraction.set_uniform_chis parameter)
,
[1]
volume_derivative (ConstraintBaseCompiled property)
(LinearGlobalConstraintCompiled property)
(LinearLocalConstraintCompiled property)
(NoConstraintCompiled property)
volume_derivative() (EntropyBaseCompiled method)
(FloryHugginsInteractionCompiled method)
(IdealGasEntropyCompiled method)
(InteractionBaseCompiled method)
VolumeFractionError
volumes (flory.common.phases.Phases parameter)
,
[1]